Resume

Highlights

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PhD in Mathematics | The University of Glasgow (2021 February)

Postdoctoral Researcher (Statistical Genomics) | The University of Edinburgh (2021 February - Present)

Machine Learning Specialisation (Online) | Stanford University (2023 March)

Data Science Professional Certificate (Online) | IBM (2019 August)

Key Skills

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Python

• Software Developer (CMA, ALMOS)
• Data Science
• Machine Learning

R

• Data Visualisation
• Statistics
• Markdown

High Performance Computing

• Large-scale Genomic Studies
• Archer2
• Eddie

Mathematics

• PhD in Pure Mathematics
• WhiteText

Cloud Computing

• DNAnexus (on UKBiobank Data)
• UKBiobank Research Analysis Platform

Reproducibility

• Git, GitLab/GitHub
• Snakemake

Statistics

• Descriptive Statistics
• Linear Mixed Models
• Advanced Regression
• Survival Analysis
• Longitudinal Analysis
• Meta Analysis

Cancer Genomics

• Detection of CNVs (Battenberg)
• Phylogeny Analysis (PhyloWGS)
• Timing of Somatic Events (MutationTimeR)
• Software Dev: Ordering Events (ALMOS)
• Mutational Signatures (cloneSig)
• High-Grade Serous Ovarian Cancer
• (HGSOC)

Quantitative Genomics

• Genome-wide Association Studies (GWAS)
• (Regenie, fastGWA, fastGWA-GLMM)
• GWAS Software Development (CMA)
• Polygenic Risk Scores
• Heritability (REML, HE-Regression)
• LD Score Regression
• Meta Analysis in GWAS

Experience

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Postdoctoral Researcher | The University of Edinburgh
2021 February - present
2023 Aug | The Institute of Genetics and Cancer (Ewing Lab)
2022 Mar | The Roslin Institute (Tenesa Lab)
2021 Feb | The Institute of Genetics and Cancer (Tenesa Lab)

Assistant Expert of the Scientific Programs | The Scientific and Technological Research Council of Turkey
2013 June - 2014 August

Grants

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Pump-priming Grant | Uncovering Synchronised Longitudional Patterns in Cancer | (UKRI - Access to Archer2)

(with Dr. Ailith Ewing. PI: Dr. Ailith Ewing)

Selected Publications

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Özkaraca, Mustafa İsmail, Agung, Mulya, Navarro, Pau, and Tenesa, Albert. Divide and Conquer Approach in Genome-wide Association Studies, Genetics. Accepted. (Co-first authorship).

Özkaraca, Mustafa İsmail. Planar substitutions to Lebesgue type space-filling curves and relatively dense fractal-like sets in the plane, Journal of Mathematical Analysis and Applications 530.2 (2024): 127654.

DOI: https://doi.org/10.1016/j.jmaa.2023.127654

Özkaraca, İsmail, and A. Muhammed Uludağ. Deformations of Lebesgue’s measure on the boundary of the Farey tree, Essays in Geometry - Dedicated to Norbert A’Campo, European Mathematical Society, (2023): 723-760.

DOI: https://doi.org/10.4171/irma/34/30

Özkaraca, Mustafa İsmail. An application of space filling curves to substitution tilings, PhD Dissertation University of Glasgow, 2021.

Students

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2025 (Ongoing)
Sierra Brink (M.S.) | Co-supervisor (with Dr. Ailith Ewing)

2023
Kili James (M.S.) | Co-supervisor (with Prof. Albert Tenesa)

Thesis: Forecasting Genetic Effects of Complex Traits in Non-European Populations using European Individuals

Selected Talks and Lectures

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Invited Speaker | XDF Tutorial: Statistical Methods for Timing Mutations | University of Edinburgh (Feb 2025)

Invited Speaker | The Past, Present and Future of Edinburgh Statistics | Royal Statistical Society (Nov 2024)

From Ranking Premier League Teams to Deciphering Temporal Dynamics in Tumour Evolution for High-Grade Serous Ovarian Cancers

Speaker | Edinburgh Next Generation of Genomics Symposium 2024 | University of Edinburgh (Oct 2024)

Temporal Orderings of Genomic Features for Patient Stratification: Applied to High Grade Serous Ovarian Cancer [Best Presentation Award]

Invited Speaker | Statistical challenges in large-scale genetic studies | University of Edinburgh (Mar 2024)

Divide and Conquer Approach in Genome-wide Association Studies

Guest Lecturer | CfS short course on statistical issues in meta-analysis | University of Edinburgh (Mar 2024)

Delivered a session on meta-analysis in genome-wide association studies, covering statistical methodologies and their applications in large-scale genetic research.

Fellowships and Scholarships

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Graduate Research Scholarship | Republic of Turkey, Ministry of National Education | 2016 - 2020

Mathematics Departmental Fellowship | University of Missouri | 2014 - 2015

Graduate Research Fellowship | Bilkent University | 2011 - 2013

Graduate Scholarship | The Scientific and Technological Research Council of Turkey | 2011 - 2013

Undergraduate Comprehensive Fellowship | Bilkent University | 2006 - 2011

Undergraduate Scholarship | The Scientific and Technological Research Council of Turkey | 2006 - 2011